Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs146909516 chr14:24415719 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs1469475 chr6:53114498 C/T 5.17E-5 509 14.8 20.13 22.73 KM Plot
LGG rs147038183 chr3:105816078 AT/A 4.69E-5 504 22.78 20.37 5.93 KM Plot
LGG rs147254549 chr3:53290198 G/C 4.29E-8 502 21.85 25.63 10.97 KM Plot
LGG rs147397695 chr16:8714136 T/TAAA 4.03E-9 502 8.17 18.93 23.93 KM Plot
LGG rs1476738 chr10:116080342 T/A 7.34E-5 505 17.93 23.95 22.78 KM Plot
LGG rs147722865 chr8:143421980 AAAT/A 1.18E-5 496 23.73 18.8 3.7 KM Plot
LGG rs147809272 chr2:40359905 AT/A 1.47E-5 507 22.83 21.7 7.13 KM Plot
LGG rs148518161 chr8:317646 A/C 7.03E-5 506 22.78 21.83 21.3 KM Plot
LGG rs148577875 chr14:102191665 CCTGA/C 1.24E-14 500 21.7 26.58 5.4 KM Plot
LGG rs148956880 chr14:102179381 G/A 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs150156932 chr8:6183854 CAAAG/C 2.31E-5 497 21.87 24.05 7.72 KM Plot
LGG rs150158301 chr14:102189583 T/TG 1.17E-14 504 21.83 27.6 5.4 KM Plot
LGG rs150174008 chr14:24415058 CAA/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs150638279 chr3:53426450 T/TAG 5.15E-8 504 21.7 27.13 10.97 KM Plot